Dean's World

Defending the liberal tradition in history, science, and philosophy.

Monday, September 25, 2006

Monday morning wake up...

A friend of mine pointed out to me a poem which explains everything you wanted to know about relativity but were afraid to ask. I've reposted it at my own site...

Wednesday, September 20, 2006

The New Scientific Method

the scientific method

If the image is cut off for you, or you just want to read more by this artist, click here.

(Thanks, Martin.)

Tuesday, September 19, 2006

"Mix-Up Chromosomes" & Cancer

It seems gallingly cutesy, but "Mix-Up Chromosomes" is how Newsweek has dubbed the aneuploidy hypothesis of cancer causation. I suppose I shouldn't complain; for a popular science explanation that's as quick a summary of the idea as I can think of.

And, as Dean's World readers learned 2 years ago, the aneuploidy hypothesis has been making major waves in cancer research, with quite a few of the world's foremost cancer researchers and geneticists acknowledging that the hypothesis holds a great deal of promise. Indeed, that's why Harvey Bialy wrote this book which we've discussed more than once: because, as the former scientific editor at Nature Biotechnology, it was obvious to Harvey several years ago that the aneuploidy theory was going to be making major waves soon. And indeed it has.

You can read Newsweek's accounting here. It's really quite dumbed-down but close enough for Newsweek I guess. When reading it, bear in mind that by the time a story like this makes it into a publication like Newsweek, it's already been understood by researchers in the field for several years.

It's kind of amusing to see how they put Peter Duesberg's name as far near the end of the article as they possibly could, and had to quote anonymous researchers criticizing him. His name should have been at the top of the article. But Harvey said people would do everything they could to keep Peter's name out of it. For this appears to be a growing problem in the entire field of peer review and the grant application process: silence anyone who makes waves.

But they're not going to be able to do it here. If this theory bears out, Peter's going to be short-listed for a Nobel--again.

If you've got a strong background in biology (grad level, I would suggest), you might want to read this book.

Saturday, September 9, 2006

Singularity Notes


I've been babbling about the Large Hadron Collider coming online next year to people who couldn't care less for some time (I think ever since I first read about it in, iirc, The Elegant Universe). It really is a huge deal, as it could finally prove or disprove string/M theory, as well as answering some questions about dark matter and the fundamental basis of mass and how it arises in our universe.

And when the Singularity does get here, we'll now be able to know (OK, arbitrarily specify) just exactly when it got here to 100 times the previous available accuracy.

Good news for those hoping to live long enough to see the Singularity: looks like Aubrey de Grey has a friend.

And if global warming, strangelets, or nuclear-armed Islamofascists render Earth uninhabitable sometime during your indefinitely extended and exquisitely measurable lifespan, more good news: we might be able to just pick up and move somewhere else.

Friday, September 1, 2006

Singularity Update


Here's a fascinating article and graph on the progress of synthetic biology. The author specifcally likens the advances in genetics to Moore's Law -- and the numbers seem to bear the analogy out.

Some practical applications of these advances are already under development:
Dr Keasling's project is to do biologically what no chemist has yet managed to accomplish—to synthesise an antimalarial drug called artemisinin cheaply. At the moment, artemisinin is a herbal remedy. It is extracted from Artemisia annua, a type of wormwood, and the best source is in China. Making artemisinin by standard chemistry requires so many steps that it is impractical. So Dr Keasling persuaded the Gates Foundation to back his idea for doing the job using synthetic biology.

For this, he has built a metabolic pathway in yeast cells that synthesises a chemical called artemisinic acid which chemists can easily convert into artemisinin. Some of the genes to do this have come from Artemisia, but others have been created from other sources.
As someone who grew up reading Frank Herbert, I've always thought the potential for genetic engineering to be greatly underestimated. Natural selection has created some wondrous things, but as terrestrial evolution has some inherent limitations and follows the path of least resistance it is certain to have missed some very useful biological sideroads. With the growing ability to model synthetic life virtually, the potential for rapidly developing radically new and useful new applications is likely to be extraordinary. And there's vast room for improvement even among existing bio-applications: we only make use of something like .01% of the planet's biomass, and what we do use is very inefficient compared to theoretically optimal solutions.

(via GeekPress)